Software

Comprehensive List of Genetic Analysis Software - Rockefeller University   

Statistical Analysis in Genetic Epidemiology (S.A.G.E.) Software Package   

Software written by London Statistical Genetics Group

Statistical Genetics Programs by JH ZHAO (King's College, London, UK)

Statistical Genetics Programs by D CURTIS (Barts, London, UK)

Statistical Genetics Programs by D CLAYTON (STATA) (Cambridge, UK)

Statistical Genetics Programs by J PRITCHARD (Chicago University, USA)

Statistical Genetics Programs by A THOMAS (Utah, USA)

Statistical Genetics -SAS- Programs by M KNAPP (Bonn, Germany)

Statistical Genetics Programs by CHAN M-S (Oxford, UK)

Mathematical Genetics Programs by G McVEAN (Oxford, UK)

Quantitative Genetic Epidemiology Programs (Fred Hutchison Cancer Research Center, USA)

Tools for Genome Mapping of Disease (Wellcome Trust Centre for Human Genetics, Oxford, UK)

University of Pittsburgh Division of Statistical Genetics Software (Pittsburgh, USA)

University of Southampton Genetic Epidemiology Software (Southampton, U.K.)

Mayo Clinic Statistical and Genetic Epidemiology (Rochester, MN, USA)

Mathematical Genetics Software (Oxford, UK)

Pedigree Analysis for Genetics (PANGAEA) (Washington University, USA)

Variation Discovery Resource Software (UW-FHCRC)

MRC Rosalind Franklin Centre for Genomic Research Software Compilation

Other specific programs

S.A.G.E.   

ARLEQUIN   

PHASE  

PHASE ONLINE  

BLADE (Bayesian Haplotype LD Mapping)  

BLADE ONLINE  

SNPTagger   

TAG 'n' TELL   

CLUMP  

GENECOUNTING (ONLINE)     

PHYLIP   

STRUCTURE

STRAT   

ADMIXMAP  

ANCESTRYMAP

HAPLOVIEW   

Genotype2LDBlock   

TFPGA   

GENEPOP   

GDA   

LDA  

DISEQ  

ONLINE HWE

ASSOCIATION TESTING (SNP)